Software, datasets, and more
Below, you will find a list of selected applications and databases produced by the Phyloinformatics Lab. Our lab is interested in tools that facilitate comparative genomics and bioinformatics of non-model organisms, focusing on host-pathogen or host-parasite systems. We are also interested in developing dedicated gene prediction and annotation tools for a range of models, from flatworms to viruses. Finally, we produce software that aids in phylogenetic analyses.
FeaturedFLAViFast Loci Annotation of Viruses
The FLAVi pipeline aims to provide an annotation framework for multiple complete or partial genomes of viruses. Currently, FLAVi is designed to annotate the genomes of viruses of the family Flaviviridae only.YBYRÁPhylogenetics Result Analyses
The YBYRÁ project integrates software solutions for data analysis in phylogenetics. It comprises tools for topological distance calculation, clade sensitivity analysis, categorization of synapomorphies, identidfication of wildcard taxa, and more.
More Applications and DatabasesCMACestode Mitogenome Annotator
Dedicated gene prediction and annotation for cestode mitogenomes.AWAInfer Genome Circularity
The AWA project integrates software solutions for testing the completeness of assemblies of circular DNA based on short sequence reads.EchinoDBInfer Genome Circularity
EchinoDB is a database consisting of amino acid sequence othoclusters from echinoderm transcriptomes.
Guides, Tutorials, and Bioinformatics TipsNanodrop and QubitHow To Use
How to use the Nanodrop and Qubit instruments available in CIPHER’s wet labsSLURMHow To Use
How to use the SLURM job scheduler, especially in UNC Charlotte’s reserach clusters.Soft TipsMiscellaneous
Assorted bioinformatics tips, tricks, and solutions.Charlotte TipsMiscellaneous
Things to do in Charlotte, NCAsk Before TravellingMiscellaneous
List of questions that the Phyloinformatics Lab suggests you to ask before visiting us in UNC Charlotte coming from outside the USA
This section may include materials that were not produced by the Phyloinformatics Lab but that we use frequently.Better PosterScientific Poster Template
A template that helps you creating a better research poster in less time. Click here for the YouTube video and click here for the template.UNC Charlotte'sOfficial PowerPoint Templates
Download the slides to your computer from Brand Identity & Visual Standards.LaTeX Slide DeckUNC Charlotte Beamer Template
A 2022 Beamer presentation template with UNC Charlotte’s official logo and colors. Based on UC Berkeley Beamer Theme and odified by Kimberly Mays (Creative Commons CC BY 4.0).
This section is dedicate to internal paperwork of the Phyloinformatics Lab.Mentor-Mentee AgreementPaperwork
Most up-to-date version of the Phloinformatics Lab’s Mentor-Mentee Agreement.Code of ConductPaperwork
Most up-to-date version of the Phloinformatics Lab’s Code of Conduct.
There are a number of resources that are made available by UNC Charlotte to the 49ners community.UNC Charlotte'sResources for the 49ners